This worked great. Thanks for the speedy response. Doug --------------------------------------------- P. Douglas Renfrew Ph.D. Postdoctoral Fellow Center for Genomics and Systems Biology Department of Biology New York University ---------------------------------------------
On Tue, Jan 18, 2011 at 1:46 PM, Jason Vertrees <jason.vertr...@schrodinger.com> wrote: > Hi Doug, > > This was a bug in the v1.3 of PyMOL. The fix was posted to the > open-source project a while ago. Until the next release, the easiest > way to correct this bug is to replace your > PYMOL_HOME/modules/pymol/wizard/measurement.py with the file from SVN > (http://pymol.svn.sourceforge.net/viewvc/pymol/trunk/pymol/modules/pymol/wizard/measurement.py?view=markup&pathrev=3920 > click "download" to save the file). > > Cheers, > > -- Jason > > On Tue, Jan 18, 2011 at 1:19 PM, Doug Renfrew <renf...@nyu.edu> wrote: >> Searched the archive could find anyone else having this problem. >> >> I am unable to use the measurement wizard to measure dihedral angles >> using MacPyMOL Education version 1.3. >> >> Opening the wizard and clicking on the four atoms produces the >> following output... >> >> You clicked /1f5a//A/PHE`410/CG >> Selector: selection "sele" defined with 1 atoms. >> You clicked /1f5a//A/PHE`410/CB >> You clicked /1f5a//A/PHE`410/CA >> You clicked /1f5a//A/PHE`410/N >> Selector-Error: Malformed selection. >> ( ( v. and + ( pk1 ) ) )<-- >> >> I am able to use the wizard to measure bonds, angles, and neighbors >> fine; only the dihedral feature is broken. >> >> Also doing a... >> >> get_dihedral /1f5a//A/PHE`410/CG, /1f5a//A/PHE`410/CB, >> /1f5a//A/PHE`410/CA, /1f5a//A/PHE`410/N >> >> produces the correct output and result. >> >> Doug >> --------------------------------------------- >> P. Douglas Renfrew Ph.D. >> Postdoctoral Fellow >> Center for Genomics and Systems Biology >> Department of Biology >> New York University >> --------------------------------------------- >> >> ------------------------------------------------------------------------------ >> Protect Your Site and Customers from Malware Attacks >> Learn about various malware tactics and how to avoid them. Understand >> malware threats, the impact they can have on your business, and how you >> can protect your company and customers by using code signing. >> http://p.sf.net/sfu/oracle-sfdevnl >> _______________________________________________ >> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) >> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net >> > > > > -- > Jason Vertrees, PhD > PyMOL Product Manager > Schrodinger, LLC > > (e) jason.vertr...@schrodinger.com > (o) +1 (603) 374-7120 > ------------------------------------------------------------------------------ Protect Your Site and Customers from Malware Attacks Learn about various malware tactics and how to avoid them. Understand malware threats, the impact they can have on your business, and how you can protect your company and customers by using code signing. http://p.sf.net/sfu/oracle-sfdevnl _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
