Hi All, I want to ask you to assess Strap's Pymol interface. This will take 3 min.
For many years Strap has been a sequence alignment view for Pymol. It provides the capability of 3D superposition and to automatically search for closely related PDB models for a given sequence. It allows to highlight sequence features such as Phosphorylated residues from databases in Pymol. The user can associate Pymol commands to sequence features. About 8.3% of all Pymol downloads had been mediated via Strap ( Personal communication Warren), since Pymol had been the best 3D-view in Strap. Strap bundles the early 0.99rc6 version of Pymol. I want to make surethat it also works well with all later and non-free versions. Can I please ask you to check whether Pymol is working properly with your version. The following two links should yield the same 3D view in Pymol and Astex, respectively. http://www.bioinformatics.org/strap/strap.php?script=http%3A%2F%2Fwww.bioinformatics.org%2Fstrap%2FPDF%2F2003%2FPMID12595256%2F6.txt&v3d=astex&aligner=neobio http://www.bioinformatics.org/strap/strap.php?script=http%3A%2F%2Fwww.bioinformatics.org%2Fstrap%2FPDF%2F2003%2FPMID12595256%2F6.txt&v3d=pymol&aligner=neobio Also please check whether atom picking is sensed by Strap. Many thanks for your help Christoph ------------------------------------------------------------------------------ Special Offer-- Download ArcSight Logger for FREE (a $49 USD value)! Finally, a world-class log management solution at an even better price-free! Download using promo code Free_Logger_4_Dev2Dev. Offer expires February 28th, so secure your free ArcSight Logger TODAY! http://p.sf.net/sfu/arcsight-sfd2d _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
