Hi Christoph, Interesting work. After associating jnlp with "javaws" on my Linux box both links/viewers worked. I can honestly say, I don't think I've ever seen anything like that.
Cheers, -- Jason On Wed, Feb 2, 2011 at 6:20 AM, Dr. Christoph Gille <christoph.gi...@charite.de> wrote: > Hi All, > > I want to ask you to assess Strap's Pymol interface. > This will take 3 min. > > For many years Strap has been a sequence alignment view for Pymol. > > It provides the capability of 3D superposition and to automatically search > for closely related PDB models for a given sequence. > > It allows to highlight sequence features such as Phosphorylated residues from > databases in Pymol. > > The user can associate Pymol commands to sequence features. > > About 8.3% of all Pymol downloads had been mediated via Strap ( Personal > communication Warren), > since Pymol had been the best 3D-view in Strap. > > Strap bundles the early 0.99rc6 version of Pymol. > I want to make surethat it also works well with all later and non-free > versions. > > Can I please ask you to check whether Pymol is working properly with your > version. > > The following two links should yield the same 3D view in Pymol and Astex, > respectively. > > http://www.bioinformatics.org/strap/strap.php?script=http%3A%2F%2Fwww.bioinformatics.org%2Fstrap%2FPDF%2F2003%2FPMID12595256%2F6.txt&v3d=astex&aligner=neobio > > http://www.bioinformatics.org/strap/strap.php?script=http%3A%2F%2Fwww.bioinformatics.org%2Fstrap%2FPDF%2F2003%2FPMID12595256%2F6.txt&v3d=pymol&aligner=neobio > > > > Also please check whether atom picking is sensed by Strap. > > Many thanks for your help > > Christoph > > > > > ------------------------------------------------------------------------------ > Special Offer-- Download ArcSight Logger for FREE (a $49 USD value)! > Finally, a world-class log management solution at an even better price-free! > Download using promo code Free_Logger_4_Dev2Dev. Offer expires > February 28th, so secure your free ArcSight Logger TODAY! > http://p.sf.net/sfu/arcsight-sfd2d > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ Special Offer-- Download ArcSight Logger for FREE (a $49 USD value)! Finally, a world-class log management solution at an even better price-free! Download using promo code Free_Logger_4_Dev2Dev. Offer expires February 28th, so secure your free ArcSight Logger TODAY! http://p.sf.net/sfu/arcsight-sfd2d _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
