Hi Tomas, > I found this website http://crick.mbu.iisc.ernet.in/~PIC/index.html, > but I would rather use pymol if possible.
I suggest you only use PyMOL to visualize the results of a validated calculation, or use it to run a script/program that performs the calculation and then view the results. At this time, PyMOL does not have any validated, built in features to do this detection. > can you help me please how to calculate interaction surface between 2 > subunits of my protein? Having said that, if you simply need something for visualization there are simple scripts on the PyMOLWiki that might help. For example, I wrote InterfaceResidues.py (http://www.pymolwiki.org/index.php/InterfaceResidues) to use difference of surface area to find possible interface residues. This was not validated, surely has lots of scientific holes, and only exists to make visualization easier in PyMOL. Cheers, -- Jason -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) [email protected] (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ Colocation vs. Managed Hosting A question and answer guide to determining the best fit for your organization - today and in the future. http://p.sf.net/sfu/internap-sfd2d _______________________________________________ PyMOL-users mailing list ([email protected]) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/[email protected]
