The solution (thanks to Jason) is to change all instances of: HEADER to: REMARK
in the pdb file. Then opening the file results in the correct behavior (as before) of loading one object with 40 frames. Regards, Peter Stern > Dear PyMol experts: > > When using Open-Source PyMOL 0.99rc6 I read in a pdb file which has > 40 coordinate sets (each is one frame in an animation) each beginning > with: > HEADER Output iset= n "xxxx_G=r_0_01" > then a list of the pdb coordinates > and ending with: > ENDMDL > "n" ranges from 0 to 39. > This results in the following output: > HEADER Output iset= 0 "xxxx_G=r_0_01" > HEADER Output iset= 1 "xxxx_G=r_0_01" > ObjectMolReadPDBStr: read MODEL 1 > ObjectMolReadPDBStr: read MODEL 2 > etc. ... > ObjectMolReadPDBStr: read MODEL 39 > ObjectMolReadPDBStr: read MODEL 40 > CmdLoad: "/home/psstern/pymol/xxxx_G=r_0_01.pdb" loaded as "xxxx_G=r_0_01". > > This then displays one molecule with 40 frames and the animation can be > activated by clicking on the red arrow. > > However, when using Open-Source PyMOL 1.3 the same file results in > different behavior. Instead of reading in one object with 40 frames > it reads in 40 different objects and displays all of them. The output > I get is: > HEADER Output iset= 0 "xxxx_G=r_0_01" > HEADER Output iset= 1 "xxxx_G=r_0_01" > HEADER Output iset= 2 "xxxx_G=r_0_01" > etc. ... > HEADER Output iset= 38 "xxxx_G=r_0_01" > HEADER Output iset= 39 "xxxx_G=r_0_01" > CmdLoad: loaded 40 objects from "/home/psstern/pymol/xxxx_G=r_0_01.pdb". > > Is this a bug or am I missing some parameter which is set differently > by default for the two versions? I couldn't find a solution in the > on-line documentation. > > Regards, > Peter Stern > > ------------------------------------------------------------------------------ Colocation vs. Managed Hosting A question and answer guide to determining the best fit for your organization - today and in the future. http://p.sf.net/sfu/internap-sfd2d _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
