Yes, great trick: fetch 1avd, type=pdb1
On 05/03/2011 10:22 PM, li...@cowsandmilk.net wrote: > http://www.rcsb.org/pdb/files/1avd.pdb1 > > The key is adding 1 to the suffix. Sometimes there is more than one > biological unit, in which case, there is a pdb2, pdb3, etc. > > -David > > On May 3, 2011, at 4:00 PM, Martin Hediger<ma....@bluewin.ch> wrote: > >> Dear all >> I would like to ask how it is possible to download the coordinate file >> for the biological assembly of a protein structure from the PDB. >> Naturally, this is not a question directly related to PyMOL, but I >> thought I'll be reaching at least a couple of >> Biochemists/Chrystallographers who know how to do this. >> As an example, when downloading the PDB file of "1AVD", I get a file >> with two chains. The biological assembly would be a tetramer, so I >> wonder what URL I would require to write into a script that does the >> downloading. >> >> Thanks for help on this. >> Martin >> >> ------------------------------------------------------------------------------ >> WhatsUp Gold - Download Free Network Management Software >> The most intuitive, comprehensive, and cost-effective network >> management toolset available today. Delivers lowest initial >> acquisition cost and overall TCO of any competing solution. >> http://p.sf.net/sfu/whatsupgold-sd >> _______________________________________________ >> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) >> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > > ------------------------------------------------------------------------------ > WhatsUp Gold - Download Free Network Management Software > The most intuitive, comprehensive, and cost-effective network > management toolset available today. Delivers lowest initial > acquisition cost and overall TCO of any competing solution. > http://p.sf.net/sfu/whatsupgold-sd > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- Hongbo ZHU Postdoctoral Researcher Structural Bioinformatics Technische Universität Dresden Biotechnology Center Tatzberg 47/49 01307 Dresden, Germany Tel: +49 (0) 351 463-40083 Fax: +49 (0) 351 463-40087 E-Mail: hongbo.zhu at biotec Webpage: www.biotec.tu-dresden.de ------------------------------------------------------------------------------ WhatsUp Gold - Download Free Network Management Software The most intuitive, comprehensive, and cost-effective network management toolset available today. Delivers lowest initial acquisition cost and overall TCO of any competing solution. http://p.sf.net/sfu/whatsupgold-sd _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
