Dear all thanks for the support, this is most helpfull. Kind regards Martin
Am 04.05.11 09:38, schrieb Hongbo Zhu: > Yes, great trick: > > fetch 1avd, type=pdb1 > > On 05/03/2011 10:22 PM, li...@cowsandmilk.net wrote: >> http://www.rcsb.org/pdb/files/1avd.pdb1 >> >> The key is adding 1 to the suffix. Sometimes there is more than one >> biological unit, in which case, there is a pdb2, pdb3, etc. >> >> -David >> >> On May 3, 2011, at 4:00 PM, Martin Hediger<ma....@bluewin.ch> wrote: >> >>> Dear all >>> I would like to ask how it is possible to download the coordinate file >>> for the biological assembly of a protein structure from the PDB. >>> Naturally, this is not a question directly related to PyMOL, but I >>> thought I'll be reaching at least a couple of >>> Biochemists/Chrystallographers who know how to do this. >>> As an example, when downloading the PDB file of "1AVD", I get a file >>> with two chains. The biological assembly would be a tetramer, so I >>> wonder what URL I would require to write into a script that does the >>> downloading. >>> >>> Thanks for help on this. >>> Martin >>> >>> ------------------------------------------------------------------------------ >>> WhatsUp Gold - Download Free Network Management Software >>> The most intuitive, comprehensive, and cost-effective network >>> management toolset available today. Delivers lowest initial >>> acquisition cost and overall TCO of any competing solution. >>> http://p.sf.net/sfu/whatsupgold-sd >>> _______________________________________________ >>> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) >>> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >>> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net >> ------------------------------------------------------------------------------ >> WhatsUp Gold - Download Free Network Management Software >> The most intuitive, comprehensive, and cost-effective network >> management toolset available today. Delivers lowest initial >> acquisition cost and overall TCO of any competing solution. >> http://p.sf.net/sfu/whatsupgold-sd >> _______________________________________________ >> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) >> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net ------------------------------------------------------------------------------ WhatsUp Gold - Download Free Network Management Software The most intuitive, comprehensive, and cost-effective network management toolset available today. Delivers lowest initial acquisition cost and overall TCO of any competing solution. http://p.sf.net/sfu/whatsupgold-sd _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
