Hi all, I pushed the change last night that fixes the stick coloring problem. You don't need the use_shaders setting either--it should just work. If, after properly upgrading PyMOL to last night's version, you still have issues with stick coloring, please let me know.
Cheers, -- Jason On Thu, Jun 9, 2011 at 11:04 AM, Andreas Spitzmüller <andreas.spitzmuel...@staff.uni-marburg.de> wrote: > Hi, I'm also using Ubuntu 10.04 with a fresh installation of pymol 1.4.1 > (Revision 3952) on a Intel GM965 graphics chip. Until now the coloring > problem seems to be solved (even without 'set use_shaders, 1'). I'll keep > on exploring all display features to check the new version, though ;) > Before, I was using pymol 1.2r1 from the Ubuntu repository and I always > had the coloring problem. > > So, thank you very much for solving it! > Andreas > > > > Am 09.06.2011, 09:58 Uhr, schrieb Gianluigi Caltabiano > <chimic...@yahoo.it>: > >> With Ubuntu 10.04 LTS - Lucid Lynx and Pymol 1.4.1 it seems to solve the >> problem. >> >> thanks, >> >> Gianluigi >> >> >> >> >> >> ________________________________ >> Da: Jason Vertrees <jason.vertr...@schrodinger.com> >> A: "pymol-users@lists.sourceforge.net" >> <pymol-users@lists.sourceforge.net> >> Inviato: Mer 8 giugno 2011, 20:34:46 >> Oggetto: Re: [PyMOL] problems cloring sticks >> >> For those using a more recent version of PyMOL (v1.4+) who have this >> stick coloring problem, can you please try: >> >> set use_shaders, 1 >> >> and let me know if that fixes the stick rendering issue? We've >> located the bug and are looking for a suitable workaround. (The >> colors are being set properly, but the video card isn't picking them >> up.) >> >> Cheers, >> >> -- Jason >> >> On Wed, Jun 1, 2011 at 12:04 PM, Ariel Talavera <talav...@cim.sld.cu> >> wrote: >>> Hi Pymolers, >>> >>> I am having problems coloring residues when they are shown as stick. The >>> coloring is properly working for the other representations like, lines, >>> surface or spheres. I am using Pymol 1.2r2 under Ubuntu 11,04. >>> >>> Thanks in advanced, >>> best regrads, >>> Ariel >>> >>> ------------------------------------------------------------------------ >>> Centro de Inmunologia Molecular >>> phone: +537 2717933 >>> e-mail: c...@cim.sld.cu >>> web: www.cim.co.cu >>> ------------------------------------------------------------------------ >>> >>> >>> Disclaimer added by CodeTwo Exchange Rules 2007 >>> http://www.codetwo.com >>> >>> >>> ------------------------------------------------------------------------------ >>> Simplify data backup and recovery for your virtual environment with >>> vRanger. >>> Installation's a snap, and flexible recovery options mean your data is >>> safe, >>> secure and there when you need it. Data protection magic? >>> Nope - It's vRanger. Get your free trial download today. >>> http://p.sf.net/sfu/quest-sfdev2dev >>> _______________________________________________ >>> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) >>> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >>> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net >>> >> >> >> > > > -- > Andreas Spitzmüller, M.Sc (Bioinformatics) > Group Prof. Gerhard Klebe > Institute of Pharmaceutical Chemistry > Philipps-Universität Marburg > Marbacher Weg 6 > D-35037 Marburg > > Phone: +49-6421-28-21339 > Email: andreas.spitzmuel...@staff.uni-marburg.de > www.agklebe.de > > ------------------------------------------------------------------------------ > EditLive Enterprise is the world's most technically advanced content > authoring tool. Experience the power of Track Changes, Inline Image > Editing and ensure content is compliant with Accessibility Checking. > http://p.sf.net/sfu/ephox-dev2dev > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ EditLive Enterprise is the world's most technically advanced content authoring tool. Experience the power of Track Changes, Inline Image Editing and ensure content is compliant with Accessibility Checking. http://p.sf.net/sfu/ephox-dev2dev _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
