Dear Joyce, It sounds like a question related to homology modeling. You could try http://salilab.org/modeller/download_installation.html or http://swissmodel.expasy.org/. In pymol, this may be a rough way: (1) align B to A, (2) create A_complete, A or ( the missing residues from B), (3) Now you got A_complete with homology residues in B. Mutate the homology residues to the corresponding ones in A. (4) Do some minimization in other molecular modeling software. However, remember that: pymol is a molecular visualization system and is not designed for molecular modeling.
Regards, Zhijian Xu Joyce Tan wrote: > Hi, > > A got a PDB file (let's name it A) while has about 90 missing > residues. I found the other PDB file (let's name it B) which was from > the homolog. Is there any way I could 'crop' the missing residues from > B to A? > > Thanks. > > ------------------------------------------------------------------------ > > ------------------------------------------------------------------------------ > EditLive Enterprise is the world's most technically advanced content > authoring tool. Experience the power of Track Changes, Inline Image > Editing and ensure content is compliant with Accessibility Checking. > http://p.sf.net/sfu/ephox-dev2dev > ------------------------------------------------------------------------ > > _______________________________________________ > PyMOL-users mailing list ([email protected]) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/[email protected] ------------------------------------------------------------------------------ EditLive Enterprise is the world's most technically advanced content authoring tool. Experience the power of Track Changes, Inline Image Editing and ensure content is compliant with Accessibility Checking. http://p.sf.net/sfu/ephox-dev2dev _______________________________________________ PyMOL-users mailing list ([email protected]) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/[email protected]
