Hi I am making a movie in pymol that I prepared with g_morph
g_morph -f1 start.pdb -f2 end.pdb -o movie.pdb -nofit (gromacs 4.5.4) Pymol does not assign the secondary structure. load movie.pdb dss, movie assigns incorrect secondary structure. In my case, dss models a complete transmembrane helix as a coil. Trying a manual repair in the form of alter resi1-resi2/, ss='H' does change the representation of the bespoke helix from a coil into a helix cartoon. But in a few frames of movie.pdb, the representation is changed to a "tube". Why is that and how can I fix it? Best, Matthias ------------------------------------------------------------------------------ All of the data generated in your IT infrastructure is seriously valuable. Why? It contains a definitive record of application performance, security threats, fraudulent activity, and more. Splunk takes this data and makes sense of it. IT sense. And common sense. http://p.sf.net/sfu/splunk-d2d-c2 _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
