Matthias Schmidt wrote, On 06/28/11 13:37: > I am making a movie in pymol that I prepared with g_morph > > g_morph -f1 start.pdb -f2 end.pdb -o movie.pdb -nofit (gromacs 4.5.4) > > Pymol does not assign the secondary structure. > > load movie.pdb > dss, movie
PyMOL calculates the consensus secondary structure over all states. You may produce distorted intermediates with g_morph, so that consensus might not be appropriate. To only consider first and last state, do this: dss movie, state=-4 Cheers, Thomas -- Thomas Holder MPI for Developmental Biology Spemannstr. 35 D-72076 Tübingen ------------------------------------------------------------------------------ All of the data generated in your IT infrastructure is seriously valuable. Why? It contains a definitive record of application performance, security threats, fraudulent activity, and more. Splunk takes this data and makes sense of it. IT sense. And common sense. http://p.sf.net/sfu/splunk-d2d-c2 _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
