Hi Lina, First, download the one-letter and three-letter amino acid converters (http://www.pymolwiki.org/index.php/Aa_codes) and run it or copy/paste it into PyMOL. It's nice to have these in your ~/.pymolrc. Then, try something like this:
# fetch a protein fetch 1rx1, async=0 # hide all hide # show ball-and-stick for the main chain preset.ball_and_stick("n. C+O+N+CA") # hide the solvent hide everything, solvent # show the labels label vis, one_letter[resn] Cheers, -- Jason On Sat, Sep 17, 2011 at 12:48 PM, lina <lina.lastn...@gmail.com> wrote: > Hi, > > Is it possible to output the sequence roughly following the skeleton of > protein structure? > > Or are there some other good way handling it. > > I tried aline (seem this name) before and also manually. It's headache to > arrange large molecules. > > Thanks for any suggestions. > > Lina > ------------------------------------------------------------------------------ > BlackBerry® DevCon Americas, Oct. 18-20, San Francisco, CA > http://p.sf.net/sfu/rim-devcon-copy2 > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ BlackBerry® DevCon Americas, Oct. 18-20, San Francisco, CA Learn about the latest advances in developing for the BlackBerry® mobile platform with sessions, labs & more. See new tools and technologies. Register for BlackBerry® DevCon today! http://p.sf.net/sfu/rim-devcon-copy1 _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net