Hi James,
I've tested DynoPlot and have some questions1- What are the meaning of the symbols in the ramachandran plot ? As I understood the tringle always for the Gly and the square for the Pro. What is the circle ?
circle is for all other amino acids that are not Gly or Pro.
Could I make some changges that the circle and squire were for any residues in the alpha- helix and betta sheet respectually ?
sure, it requires little modifications in the script.
2- I'm intresting in working with the enssembles of the pdbs' So I 'd like to compare torsions of different residues for different structures in one plot. But when Ive done such comparison I noticed that residues from differen structures were marked on Ramachandran map with the one default colour. How I can specify that residued from different strctures were represented with different colour ?
almost the same modification as for previous question. See attachment for modified script. It colors by atom color and has symbols for secondary structure (sheet=square, helix=triangle).
3- Finally I'd like to compare Chi-1 angle ( rotation on first bond beetween backbone and side chain groups) for my enssemble. How I could mark Chi-1 angle for all my structures and plot in on Rama map?
I don't know of any easy solution to that, sorry. Maybe someone else? Cheers, Thomas -- Thomas Holder MPI for Developmental Biology
DynoPlot.py
Description: application/chimera
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