Hi James,
> Could you tell me in what strings the marker for the particular ss
> element is defined ( e.g I want to change from triangle to oval
> representation for alpha-helixes )?
look for this line:
mark = {'H': 'Tri', 'S': 'Rect'}.get(ss, self.mark)
I just updated the PyMOLWiki page with the modifications (but markers by
secondary structure are disabled by default to not change the previous
behaviour).
http://pymolwiki.org/index.php/DynoPlot
Cheers,
Thomas
--
Thomas Holder
MPI for Developmental Biology
Spemannstr. 35
D-72076 Tübingen
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