Hi James, Pymol adds a TER statement at the end of each continuous piece of the protein.
Cheers, Tsjerk 2012/3/21 James Starlight <jmsstarli...@gmail.com>: > Hi Tsjerk, > > I'm not quite understood if pymol adds TER enty after residues wich consist > of missing atoms or in the place with the missing residues ( e.g in loops > of GPCRs or other flexible regions) ? > > James > > 21 марта 2012 г. 10:38 пользователь Tsjerk Wassenaar <tsje...@gmail.com> > написал: > >> Hi James, >> >> Broken refers to non-continuity of a chain, i.e. missing residues. Broken >> does not mean wrong... But for the rest, I admitted to be wrong with my >> arguments already :p >> >> Cheers, >> >> Tsjerk >> >> On Mar 21, 2012 6:47 AM, "James Starlight" <jmsstarli...@gmail.com> wrote: >> >> Hi Tsjerk! >> >> It's very strange because I've obtained all same structures with the same >> TER statements in the body of the pdb file in the case of processing of >> x-ray structures of GPCRs ( It's different membrane proteins solved by the >> different lab groups in the different time ). So it's strange that all of >> those structures were broken! >> >> James >> >> 20 марта 2012 г. 14:35 пользователь Tsjerk Wassenaar <tsje...@gmail.com> >> написал: >> >> > > Hi James, > > In addition to Thomas' answer... What is _wrong_ about >> > > the TER > statement? Your ... >> >> > -- Tsjerk A. Wassenaar, Ph.D. post-doctoral researcher Molecular Dynamics Group * Groningen Institute for Biomolecular Research and Biotechnology * Zernike Institute for Advanced Materials University of Groningen The Netherlands ------------------------------------------------------------------------------ This SF email is sponsosred by: Try Windows Azure free for 90 days Click Here http://p.sf.net/sfu/sfd2d-msazure _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
