Hi James,
the "beyond" operator yields true only if the considered atom pair
distance is beyond the threshold in ALL states. To remove atoms which
are beyond threshold in ANY state, try this:
python
for i in range(cmd.count_states()):
cmd.select('tmp', 'solvent beyond 5 of polymer', state=i+1)
cmd.remove('tmp')
python end
Hope that helps.
Cheers,
Thomas
On 06/28/2012 09:01 AM, James Starlight wrote:
> Hi Thomas,
>
> I wounder to know what corrections should I add to the below selection
> in case of multi state object
>
> remove solvent beyond 3.5 of polymer
>
> e.g I'm working with the MD trajectory saved in PDB format. I've decided
> to deleate all solvent from all 100 frames simultaneously but the above
> command works fine only in case of 1 state object .
>
> James
--
Thomas Holder
MPI for Developmental Biology
Spemannstr. 35
D-72076 Tübingen
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