Re: [PyMOL] How to avoid the protonation of a particular atom

[João Rodrigues]

Hi,

Protonate everyone, deprotonate that particular atom

Cheers,

João


2013/4/1 <gdus...@cbm.uam.es>

> Hello,
>
> I'm working with a receptor that has a catalytic Zn and i have to
> protonate everything except this atom. I have proved everything to avoid
> this protonation (put Zn2+ on the pdb, change the protonation with
> builder...etc) without success. Could you please tell me how to do this?
>
> I'm using PyMOL 1.4.1 in Linux.
>
> Thank you very much.
> Best regards,
>
> Gema.
>
>
>
> ------------------------------------------------------------------------------
> Own the Future-Intel&reg; Level Up Game Demo Contest 2013
> Rise to greatness in Intel's independent game demo contest.
> Compete for recognition, cash, and the chance to get your game
> on Steam. $5K grand prize plus 10 genre and skill prizes.
> Submit your demo by 6/6/13. http://p.sf.net/sfu/intel_levelupd2d
> _______________________________________________
> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
>

------------------------------------------------------------------------------
Own the Future-Intel&reg; Level Up Game Demo Contest 2013
Rise to greatness in Intel's independent game demo contest.
Compete for recognition, cash, and the chance to get your game 
on Steam. $5K grand prize plus 10 genre and skill prizes. 
Submit your demo by 6/6/13. http://p.sf.net/sfu/intel_levelupd2d
_______________________________________________
PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net