Hi Mehmet, secondary structure is not a per-state property unless the object has discrete states. Just write out the multi-state file and load it in again as discrete:
PyMOL> save yourmorph.pdb, yourmorph, state=0 PyMOL> delete yourmorph PyMOL> load yourmorph.pdb, discrete=1 PyMOL> dss There was almost the same question two days ago (Subject: SS in a trajectory). Cheers, Thomas vapour wrote, On 04/26/13 17:05: > Hi, > > I am trying to generate a movie which shows a conformational change > of my protein. In there, I have one helix unwinding completely and loses > its helicity. When I do morpheasy, the secondary structure of this helix > from the starting conformation is still preserved and not converted into > the loop conformation at the end of the movie. How can I depict this > change of secondary structure with the morpheasy? > > Cheers, > mehmet -- Thomas Holder PyMOL Developer Schrödinger Contractor ------------------------------------------------------------------------------ Try New Relic Now & We'll Send You this Cool Shirt New Relic is the only SaaS-based application performance monitoring service that delivers powerful full stack analytics. Optimize and monitor your browser, app, & servers with just a few lines of code. Try New Relic and get this awesome Nerd Life shirt! http://p.sf.net/sfu/newrelic_d2d_apr _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
