sudo port install tk -quartz
It has nothing to do with what OS X ships with, it has to do with current
macports defaults, which changed around 18 months ago. You can dig around
the macports bug reports to see discussion of the change.
-David
On Tue, May 7, 2013 at 1:32 PM, Rhitankar Pal <rhitan...@gmail.com> wrote:
> Hi David,
>
> I installed tcl without the corefoundation and now while trying to install
> pymol I am getting the following error message:
>
> Error: org.macports.archivefetch for port pymol returned: tk must be
> installed without +quartz.
>
> How can I install tk without +quartz? Are these issues happening because
> OSX 10.8.2 comes with preinstalled tcl and tk ?
>
> Thanks
> Rhitankar
>
>
>
>
>
> On Tue, May 7, 2013 at 12:30 PM, David Hall <li...@cowsandmilk.net> wrote:
>
>> by default, macports installs tcl with the +corefoundation variant (see
>> http://guide.macports.org/#using.variants )
>>
>> if you do:
>>
>> sudo port install tcl -corefoundation
>>
>> that will solve the problem.
>>
>> -David
>>
>>
>>
>>
>> On Mon, May 6, 2013 at 8:26 PM, Rhitankar Pal <rhitan...@gmail.com>wrote:
>>
>>> Dear Thomas,
>>>
>>> One more question. When I tried to install pymol using port [ sudo port
>>> install pymol ] I get the following error message:
>>>
>>> Error: org.macports.archivefetch for port pymol returned: tcl must be
>>> installed without +corefoundation.
>>>
>>> Do you have any idea why there is this error message?
>>>
>>> Eventually I downloaded the tar.gz and installed it using the setup.py
>>> inside. Which is apparently not compatible with the Pmw2 and therefore gave
>>> the error I mentioned in my previous email. Any help would be appreciated
>>>
>>> Thanks
>>> Rhitankar
>>>
>>>
>>>
>>>
>>>
>>> On Mon, May 6, 2013 at 8:20 PM, Rhitankar Pal <rhitan...@gmail.com>wrote:
>>>
>>>> Dear Thomas,
>>>>
>>>> Now I have installed Pmw.1.3 which should be the one compatible with
>>>> python2.7 I guess. However I am still getting the same error. I think pymol
>>>> is trying to use Pmw2 by default. Is there any way we can ask it to use 1.3
>>>> instead?
>>>>
>>>> Thanks for your help
>>>>
>>>> Rhitankar
>>>>
>>>>
>>>>
>>>> On Sat, May 4, 2013 at 6:21 AM, Thomas Holder <
>>>> thomas.hol...@schrodinger.com> wrote:
>>>>
>>>>> Hi Rhitankar,
>>>>>
>>>>> looks like you installed the python3 version of Pmw which is not
>>>>> compatible with python 2.7.
>>>>>
>>>>> Cheers,
>>>>> Thomas
>>>>>
>>>>> Rhitankar Pal wrote, On 05/03/13 21:16:
>>>>> > Dear Pymol developers,
>>>>> >
>>>>> > I have recently installed pymol 1.6.x in MAC OS X 10.8.2 and have the
>>>>> > following error while opening the GUI
>>>>> >
>>>>> > Traceback (most recent call last):
>>>>> > File "/Library/Python/2.7/site-packages/pmg_tk/__init__.py", line
>>>>> 35,
>>>>> > in run
>>>>> > PMGApp(pymol_instance,skin).run(poll)
>>>>> > File "/Library/Python/2.7/site-packages/pmg_tk/PMGApp.py", line
>>>>> 325,
>>>>> > in __init__
>>>>> > self.runSkin()
>>>>> > File "/Library/Python/2.7/site-packages/pmg_tk/PMGApp.py", line
>>>>> 251,
>>>>> > in runSkin
>>>>> > self.skin.setup()
>>>>> > File
>>>>> > "/Library/Python/2.7/site-packages/pmg_tk/skins/normal/__init__.py",
>>>>> > line 3661, in setup
>>>>> > self.createInterface()
>>>>> > File
>>>>> > "/Library/Python/2.7/site-packages/pmg_tk/skins/normal/__init__.py",
>>>>> > line 3634, in createInterface
>>>>> > self.balloon = Pmw.Balloon(self.root)
>>>>> > File
>>>>> > "/Library/Python/2.7/site-packages/Pmw/Pmw_2_0_0/lib/PmwBalloon.py",
>>>>> > line 28, in __init__
>>>>> > Pmw.MegaToplevel.__init__(self, parent)
>>>>> > File
>>>>> "/Library/Python/2.7/site-packages/Pmw/Pmw_2_0_0/lib/PmwBase.py",
>>>>> > line 982, in __init__
>>>>> > super().__init__(parent, tkinter.Toplevel)
>>>>> > TypeError: super() takes at least 1 argument (0 given)
>>>>> >
>>>>> > As a result it never opens the "The Pymol Molecular Graphics System"
>>>>> > window. Can anyone help to find out what might be wrong.
>>>>> >
>>>>> > Thanks
>>>>> > Rhitankar
>>>>> >
>>>>> > --
>>>>> > Rhitankar Pal
>>>>> > Postdoctoral Researcher,
>>>>> > Dept of Chemistry, Yale University
>>>>> > New Haven, CT 06511
>>>>>
>>>>> --
>>>>> Thomas Holder
>>>>> PyMOL Developer
>>>>> Schrödinger Contractor
>>>>>
>>>>>
>>>>> ------------------------------------------------------------------------------
>>>>> Get 100% visibility into Java/.NET code with AppDynamics Lite
>>>>> It's a free troubleshooting tool designed for production
>>>>> Get down to code-level detail for bottlenecks, with <2% overhead.
>>>>> Download for free and get started troubleshooting in minutes.
>>>>> http://p.sf.net/sfu/appdyn_d2d_ap2
>>>>> _______________________________________________
>>>>> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
>>>>> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
>>>>> Archives:
>>>>> http://www.mail-archive.com/pymol-users@lists.sourceforge.net
>>>>>
>>>>
>>>>
>>>>
>>>> --
>>>> Rhitankar Pal
>>>> Postdoctoral Researcher,
>>>> Dept of Chemistry, Yale University
>>>> New Haven, CT 06511
>>>>
>>>
>>>
>>>
>>> --
>>> Rhitankar Pal
>>> Postdoctoral Researcher,
>>> Dept of Chemistry, Yale University
>>> New Haven, CT 06511
>>>
>>>
>>> ------------------------------------------------------------------------------
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>>
>>
>
>
> --
> Rhitankar Pal
> Postdoctoral Researcher,
> Dept of Chemistry, Yale University
> New Haven, CT 06511
>
------------------------------------------------------------------------------
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their applications. This 200-page book is written by three acclaimed
leaders in the field. The early access version is available now.
Download your free book today! http://p.sf.net/sfu/neotech_d2d_may
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