Hi Rhitankar, this depends which python you used and which arguments you passed to setup.py. I assume you used system python and no arguments, then just remove these:
/Library/Python/2.7/site-packages/pymol /usr/local/bin/pymol Cheers, Thomas Rhitankar Pal wrote, On 05/08/13 18:46: > Dear Thomas, > > Thanks for the informations. I think I am able to use port to install > the pymol1.5 version but I would also need to remove the existing 1.6 > version. Can you tell me the command to uninstall the existing version > and then do a fresh installation? > > Thanks again > Rhitankar > > > On Wed, May 8, 2013 at 12:34 PM, Thomas Holder wrote: > > Dear Rhitankar, > > I should point out that Schrödinger also sells pre-compiled PyMOL with > easy to use installers. http://pymol.org/academic.html > > Open-Source PyMOL was always targeted to power-users who are familiar > with compiling software themselves. > > Regarding your question: It will most likely not be possible to compile > and install open-source PyMOL with the system python on Mac, because OSX > ships with an incompatible Tkinter library. So Pmw won't be your last > problem. > > With macports it should work fine if you do this (see also David's > answers): > > sudo port install tcl -corefoundation +threads > sudo port install tk -quartz +x11 > sudo port install pymol > > Hope that helps. > > Cheers, > Thomas > > Rhitankar Pal wrote, On 05/08/13 18:01: > > Dear Thomas, > > > > Even after I installed the Pmw1.3 which should be compatible with > > python2.7 and reinstalling the pymol, I am still the following error > > message. > > > > File "/Library/Python/2.7/site-packages/pymol/__init__.py", line > 450, > > in launch_gui > > __import__(self.invocation.options.gui) > > File "/Library/Python/2.7/site-packages/pmg_tk/__init__.py", > line 22, > > in <module> > > from PMGApp import * > > File "/Library/Python/2.7/site-packages/pmg_tk/PMGApp.py", line > 33, in > > <module> > > class PMGApp(Pmw.MegaWidget): > > File > > > "/Library/Python/2.7/site-packages/Pmw/Pmw_2_0_0/lib/PmwLoader.py", line > > 131, in __getattr__ > > self._initialise() > > File > > > "/Library/Python/2.7/site-packages/Pmw/Pmw_2_0_0/lib/PmwLoader.py", line > > 89, in _initialise > > raise ImportError(msg) > > > > This is preventing it from opening the GUI. Do you have any idea what > > should I do to avoid this. > > > > Thanks for your help. > > > > Rhitankar > > > > > > On Sat, May 4, 2013 at 6:21 AM, Thomas Holder wrote: > > > > Hi Rhitankar, > > > > looks like you installed the python3 version of Pmw which is not > > compatible with python 2.7. > > > > Cheers, > > Thomas > > > > Rhitankar Pal wrote, On 05/03/13 21:16: > > > Dear Pymol developers, > > > > > > I have recently installed pymol 1.6.x in MAC OS X 10.8.2 and > have the > > > following error while opening the GUI > > > > > > Traceback (most recent call last): > > > File "/Library/Python/2.7/site-packages/pmg_tk/__init__.py", > > line 35, > > > in run > > > PMGApp(pymol_instance,skin).run(poll) > > > File "/Library/Python/2.7/site-packages/pmg_tk/PMGApp.py", > line 325, > > > in __init__ > > > self.runSkin() > > > File "/Library/Python/2.7/site-packages/pmg_tk/PMGApp.py", > line 251, > > > in runSkin > > > self.skin.setup() > > > File > > > > "/Library/Python/2.7/site-packages/pmg_tk/skins/normal/__init__.py", > > > line 3661, in setup > > > self.createInterface() > > > File > > > > "/Library/Python/2.7/site-packages/pmg_tk/skins/normal/__init__.py", > > > line 3634, in createInterface > > > self.balloon = Pmw.Balloon(self.root) > > > File > > > > "/Library/Python/2.7/site-packages/Pmw/Pmw_2_0_0/lib/PmwBalloon.py", > > > line 28, in __init__ > > > Pmw.MegaToplevel.__init__(self, parent) > > > File > > "/Library/Python/2.7/site-packages/Pmw/Pmw_2_0_0/lib/PmwBase.py", > > > line 982, in __init__ > > > super().__init__(parent, tkinter.Toplevel) > > > TypeError: super() takes at least 1 argument (0 given) > > > > > > As a result it never opens the "The Pymol Molecular Graphics > System" > > > window. Can anyone help to find out what might be wrong. > > > > > > Thanks > > > Rhitankar > -- > Rhitankar Pal > Postdoctoral Researcher, > Dept of Chemistry, Yale University > New Haven, CT 06511 -- Thomas Holder PyMOL Developer Schrödinger Contractor ------------------------------------------------------------------------------ Learn Graph Databases - Download FREE O'Reilly Book "Graph Databases" is the definitive new guide to graph databases and their applications. This 200-page book is written by three acclaimed leaders in the field. The early access version is available now. Download your free book today! http://p.sf.net/sfu/neotech_d2d_may _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
