Hi Jed, On Thu, 2014-01-16 10:28 EST, Jed Goldstone <jgoldst...@whoi.edu> wrote:
> I know this seems silly, but I can't figure out how to combine multiple > separate objects into one multistate object. I have a set of Modeler > models loaded from a single pdb file, automagically separated into > separate objects that have been aligned, and I want to combine them into > one object in order to run Robert Cambell's rmsf_states script (and, > also since it's just easier to compare and manipulate). You probably have a reason for loading the models into separate objects, but my first suggestion would be to just load all of the models into a single object in the first place. You can align them using the "intra_fit" command. I normally load my modeller models into one object with my load_models.py script or my load_best.py script if I want them sorted by modeller's objective function value (both scripts are also on my web site). I like being able to see the models individually or all at once (with set all_states, 1). Cheers, Rob > > I've searched the manual, the sourceforge list, and the wiki. Somehow > the command 'create' with 'target_state=-1' and 'discrete=1' seems like > it should do this, but all the objects end up in the first state (and > the cartoon representation is a subset of what it should be (other > representations are fine). > I'm using incentive v1.6.0.0 on Windows 7. > > Jed > -- Robert L. Campbell, Ph.D. Senior Research Associate/Adjunct Assistant Professor Dept. of Biomedical & Molecular Sciences Botterell Hall Rm 644 Queen's University, Kingston, ON K7L 3N6 Canada Tel: 613-533-6821 <robert.campb...@queensu.ca> http://pldserver1.biochem.queensu.ca/~rlc ------------------------------------------------------------------------------ CenturyLink Cloud: The Leader in Enterprise Cloud Services. Learn Why More Businesses Are Choosing CenturyLink Cloud For Critical Workloads, Development Environments & Everything In Between. Get a Quote or Start a Free Trial Today. http://pubads.g.doubleclick.net/gampad/clk?id=119420431&iu=/4140/ostg.clktrk _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
