Jed,
Yes, the create command should more intelligently handle the wildcard. In
fact, I started out trying the same thing you did. I'll add this as a
feature request.
Cheers,
-- Jason
On Thu, Jan 16, 2014 at 10:06 AM, Jed Goldstone <jgoldst...@whoi.edu> wrote:
> Thanks! That works. I kept trying to avoid writing a script, figuring
> that it should just be an option in 'create'. That is, if the selection
> old_obj has a wild card, then
> create new_obj, old_obj*,1,-1
> should work. Clearly not; could this be a future feature?
>
> Jed
>
>
>
>
> On 1/16/2014 10:56 AM, Jason Vertrees wrote:
>
> Jed,
>
> You are correct in that you should be using the "create" command:
>
> # creates new_obj from old_obj1 by copying old_obj1
> # in state 1 to new_obj in state 1
>
> create new_obj, old_obj1, 1, 1
>
> # creates new_obj from old_obj2 by copying old_obj2
> # in state 1 to new_obj in state 2
>
> create new_obj, old_obj2, 1, 2
>
> # creates new_obj from old_obj3 by copying old_obj3
> # in state 1 to new_obj in state 3
>
> create new_obj, old_obj3, 1, 3
>
>
>
> If you have any empty session, this will automate the process:
>
> python
>
> for x in cmd.get_names():
>
> cmd.create("combined_models", x, 1, -1)
>
> python end
>
> Cheers,
>
> -- Jason
>
>
>
> On Thu, Jan 16, 2014 at 9:28 AM, Jed Goldstone <jgoldst...@whoi.edu>wrote:
>
>> I know this seems silly, but I can't figure out how to combine multiple
>> separate objects into one multistate object. I have a set of Modeler
>> models loaded from a single pdb file, automagically separated into
>> separate objects that have been aligned, and I want to combine them into
>> one object in order to run Robert Cambell's rmsf_states script (and,
>> also since it's just easier to compare and manipulate).
>>
>> I've searched the manual, the sourceforge list, and the wiki. Somehow
>> the command 'create' with 'target_state=-1' and 'discrete=1' seems like
>> it should do this, but all the objects end up in the first state (and
>> the cartoon representation is a subset of what it should be (other
>> representations are fine).
>> I'm using incentive v1.6.0.0 on Windows 7.
>>
>> Jed
>>
>> --
>> ------------------------
>> Jed Goldstone, PhD
>> Research Specialist
>> Woods Hole Oceanographic Institution
>> Redfield 3-52 MS#32
>> Woods Hole, MA 02543
>> http://www.whoi.edu/hpb/Site.do?id=481
>> Phone: 508-289-4823
>>
>>
>>
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>
>
>
> --
> Jason Vertrees, PhD
> Director of Core Modeling Products
> Schrödinger, Inc.
>
> (e) jason.vertr...@schrodinger.com
> (o) +1 (603) 374-7120
>
>
> --
> ------------------------
> Jed Goldstone, PhD
> Research Specialist
> Woods Hole Oceanographic Institution
> Redfield 3-52 MS#32
> Woods Hole, MA 02543http://www.whoi.edu/hpb/Site.do?id=481
> Phone: 508-289-4823
>
>
--
Jason Vertrees, PhD
Director of Core Modeling Products
Schrödinger, Inc.
(e) jason.vertr...@schrodinger.com
(o) +1 (603) 374-7120
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