there is a "join_states" command in PSICO.
http://pymolwiki.org/index.php/psico
Cheers,
Thomas
On 16 Jan 2014, at 11:15, Jason Vertrees <jason.vertr...@schrodinger.com> wrote:
> Jed,
>
> Yes, the create command should more intelligently handle the wildcard. In
> fact, I started out trying the same thing you did. I'll add this as a feature
> request.
>
> Cheers,
>
> -- Jason
>
>
> On Thu, Jan 16, 2014 at 10:06 AM, Jed Goldstone <jgoldst...@whoi.edu> wrote:
> Thanks! That works. I kept trying to avoid writing a script, figuring that it
> should just be an option in 'create'. That is, if the selection old_obj has a
> wild card, then
> create new_obj, old_obj*,1,-1
> should work. Clearly not; could this be a future feature?
>
> Jed
>
>
>
>
> On 1/16/2014 10:56 AM, Jason Vertrees wrote:
>> Jed,
>>
>> You are correct in that you should be using the "create" command:
>>
>> # creates new_obj from old_obj1 by copying old_obj1
>> # in state 1 to new_obj in state 1
>>
>> create new_obj, old_obj1, 1, 1
>>
>> # creates new_obj from old_obj2 by copying old_obj2
>> # in state 1 to new_obj in state 2
>>
>> create new_obj, old_obj2, 1, 2
>>
>> # creates new_obj from old_obj3 by copying old_obj3
>> # in state 1 to new_obj in state 3
>>
>> create new_obj, old_obj3, 1, 3
>>
>>
>>
>> If you have any empty session, this will automate the process:
>>
>> python
>>
>> for x in cmd.get_names():
>>
>> cmd.create("combined_models", x, 1, -1)
>>
>> python end
>>
>> Cheers,
>>
>> -- Jason
>>
>>
>>
>> On Thu, Jan 16, 2014 at 9:28 AM, Jed Goldstone <jgoldst...@whoi.edu> wrote:
>> I know this seems silly, but I can't figure out how to combine multiple
>> separate objects into one multistate object. I have a set of Modeler
>> models loaded from a single pdb file, automagically separated into
>> separate objects that have been aligned, and I want to combine them into
>> one object in order to run Robert Cambell's rmsf_states script (and,
>> also since it's just easier to compare and manipulate).
>>
>> I've searched the manual, the sourceforge list, and the wiki. Somehow
>> the command 'create' with 'target_state=-1' and 'discrete=1' seems like
>> it should do this, but all the objects end up in the first state (and
>> the cartoon representation is a subset of what it should be (other
>> representations are fine).
>> I'm using incentive v1.6.0.0 on Windows 7.
>>
>> Jed
--
Thomas Holder
PyMOL Developer
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