Hi Sampsa -

The long list of ids crashes for me as well.  Instead of listing each id 
separately, you can use ranges to define your selections.

select paska, id 36-58
select isopaska, id 36-350

If you need to use non-continuous ids, you can use Boolean logic to join the 
ranges:

select isopaska_without_id_59, id 36-58 or id 60-350 

Cheers, 
Jared

--
Jared Sampson
Xiangpeng Kong Lab
NYU Langone Medical Center
550 First Avenue
New York, NY 10016
212-263-7898
http://kong.med.nyu.edu/






On Feb 18, 2014, at 1:50 PM, Sampsa Riikonen <sampsa.riiko...@iki.fi>
 wrote:

> Hi,
> 
> I am trying to select a large number of atoms, using a pymol script.  
> The first script file looks like this:
> -----------
> select paska, id 
> 36+37+38+39+40+41+42+43+44+45+46+47+48+49+50+51+52+53+54+55+56+57+58
> ------------
> The second one like this:
> ------------
> select isopaska, id 
> 36+37+38+39+40+41+42+43+44+45+46+47+48+49+50+51+52+53+54+55+56+57+58+59+60+61+62+63+64+65+66+67+68+69+70+71+72+73+74+75+76+77+78+79+80+81+82+83+84+85+86+87+88+89+90+91+92+93+94+95+96+97+98+99+100+101+102+103+104+105+106+107+108+109+110+111+112+113+114+115+116+117+118+119+120+121+122+123+124+125+126+127+128+129+130+131+132+133+134+135+136+137+138+139+140+141+142+143+144+145+146+147+148+149+150+151+152+153+154+155+156+157+158+159+160+161+162+163+164+165+166+167+168+169+170+171+172+173+174+175+176+177+178+179+180+181+182+183+184+185+186+187+188+189+190+191+192+193+194+195+196+197+198+199+200+201+202+203+204+205+206+207+208+209+210+211+212+213+214+215+216+217+218+219+220+221+222+223+224+225+226+227+228+229+230+231+232+233+234+235+236+237+238+239+240+241+242+243+244+245+246+247+248+249+250+251+252+253+254+255+256+257+258+259+260+261+262+263+264+265+266+267+268+269+270+271+272+273+274+275+276+277+278+279+280+281+282+283+284+285+286+287+288+289+290+291+292+293+294+295+296+297+298+299+300+
 
301+302+303+304+305+306+307+308+309+310+311+312+313+314+315+316+317+318+319+320+321+322+323+324+325+326+327+328+329+330+331+332+333+334+335+336+337+338+339+340+341+342+343+344+345+346+347+348+349+350
> -------------
> 
> When running the first script, it works ok, however, if I run the second 
> one, pymol crashes:
> ---------------
> 
> *** buffer overflow detected ***: python2.7 terminated
> ======= Backtrace: =========
> /lib/x86_64-linux-gnu/libc.so.6(__fortify_fail+0x5c)[0x7f171c6ce08c]
> /lib/x86_64-linux-gnu/libc.so.6(+0x111020)[0x7f171c6cd020]
> ...
> ---------------
> 
> How can I select a laarge number of atoms based on their numbers?
> 
> Regards,
> 
> Sampsa
> 
> 
> 
> 
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