Hi Afshan,

as I understand you want to show isomesh for your density. Please have look at 
these PyMOLWiki pages:

http://pymolwiki.org/index.php/Isomesh
http://pymolwiki.org/index.php/Display_CCP4_Maps

Hope that helps.

Cheers,
  Thomas

On 20 Feb 2014, at 02:43, Afshan Begum <afshan...@yahoo.com> wrote:
> Dear User of pymol,
> 
> I want to need some guidline as i am quite new in pymol. I want to make my 
> protein structure figure with pymol and how can i show a difference map in a 
> figure, actually my protein contain ligand and i want to show positive 
> density as well for that i have run my ligand with zero occupancy and keep 
> the ligand there so now i want to show both map in my figure but i do not 
> know how to do it . Any one help me to get it would be appreciated.
> 
> Thanks
> 
> Best Regards
> 
> AFSHAN

-- 
Thomas Holder
PyMOL Developer
Schrödinger, Inc.


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