Oh, and always use 'reply-to-all' if this is follow-up on a post.
Cheers,
Tsjerk
---------- Forwarded message ----------
From: Tsjerk Wassenaar <tsje...@gmail.com>
Date: Sat, Apr 4, 2015 at 9:14 PM
Subject: Re: [PyMOL] Displaying covalent bonds between amino acids (within
protein) and ligand
To: Brenton Horne <brentonho...@ymail.com>
Hi Brenton,
Try:
help select
Cheers,
Tsjerk
On Sat, Apr 4, 2015 at 7:50 PM, Brenton Horne <brentonho...@ymail.com>
wrote:
> Thanks for this, but I would like to know one extra thing. How do I define
> a variable that corresponds to a selection (e.g., resi 62 and r. pnm) that
> I can call later on in a PML script? I ask because I'd like to colour the
> PNM-ser62 complex according to the element each atom belongs to.
> Specifically this is the sort of colouring I have in mind:
>
>> color black, elem c and sel
>> color blue, elem n and sel
>> color white, elem h and sel
>> color red, elem o and sel
>> color orange, elem p and sel
>> color sulfur, elem s and sel
>> color fluorine, elem f and sel
>> color chlorine, elem cl and sel
>>
> where sel is this selection variable I'd like.
>
>
> On 5/04/2015 12:16 AM, Tsjerk Wassenaar wrote:
>
>> hide
>> show cartoon
>> show sticks, r. pnm
>> show sticks, resi 62 and not name c+n+o
>>
>
>
--
Tsjerk A. Wassenaar, Ph.D.
--
Tsjerk A. Wassenaar, Ph.D.
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