Hi Jordan, I think there are no drawbacks, I'm using this version for several months now and it works great. Of course such a question is hard to answer a-priori, that's why we didn't simply replace the regular bundle but offer the "syspython" version in addition.
Cheers, Thomas On 23 Jun 2015, at 18:04, Jordan Willis <jwillis0...@gmail.com> wrote: > Wow that is so cool. Is there any drawbacks I can expect? > > >> On Jun 23, 2015, at 1:44 PM, Thomas Holder <thomas.hol...@schrodinger.com> >> wrote: >> >> Hi Jordan, >> >> if you want to use MacPyMOL with other libraries then I recommend to use the >> "syspython" version that we offer (installer named >> MacPyMOL-v1.7.x.x-syspython.dmg). It simply does not bundle a Python >> distribution, but uses /usr/bin/python2.7 to run MacPyMOL. >> >> Related: >> https://sourceforge.net/p/pymol/mailman/message/33531659/ >> >> Cheers, >> Thomas >> >> On 21 Jun 2015, at 21:44, Jordan Willis <jwillis0...@gmail.com> wrote: >> >>> Hi, >>> >>> I’m trying to use the pandas library with MacPymol 1.7.05 but get the >>> following with import pandas. >>> >>> File "/Library/Python/2.7/site-packages/pandas/__init__.py", line 6, in >>> <module> >>> from . import hashtable, tslib, lib >>> File "numpy.pxd", line 157, in init pandas.hashtable >>> (pandas/hashtable.c:22315) >>> ValueError: numpy.dtype has the wrong size, try recompiling >>> >>> Obviously there is some conflict with PyMOLs python interpreter and the >>> interpreter I installed pandas with. That’s fine, I’ll just compile pandas >>> against PyMOLs python library, but I don’t know how to do it. >>> >>> I used pip within pymol >>> >>> python >>> import pip >>> pip.main([‘install’,’pandas’,’—reinstall’]) >>> python end >>> >>> >>> but got something wrong with the certificate in the pypy server >>> >>> /Applications/MacPyMOL.app/Contents/MacOS/MacPyMOL run on Sun Jun 21 >>> 18:35:15 2015 >>> Getting page https://pypi.python.org/simple/pandas/ >>> Could not fetch URL https://pypi.python.org/simple/pandas/: connection >>> error: [Errno 1] _ssl.c:504: error:14090086:SSL >>> routines:SSL3_GET_SERVER_CERTIFICATE:certificate verify failed >>> >>> . I thought before I dug too deep, I would check with the list to see if >>> anyone has added the pandas library that is compatible with pymol. Or more >>> generally, how would one install third party libraries for use with pymol. >>> If you don’t use pandas, I highly recommend it. It’s incredibly useful for >>> manipulating data and it would be very handy to have with pymol scrips. >>> >>> Jordan -- Thomas Holder PyMOL Principal Developer Schrödinger, Inc. ------------------------------------------------------------------------------ Monitor 25 network devices or servers for free with OpManager! OpManager is web-based network management software that monitors network devices and physical & virtual servers, alerts via email & sms for fault. Monitor 25 devices for free with no restriction. Download now http://ad.doubleclick.net/ddm/clk/292181274;119417398;o _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
