Thanks for the tip Adam!
However, it would be nice to make movies in the way I requested.
Nasir
On Wed, Feb 17, 2016 at 12:41 AM, H. Adam Steinberg <
h.adam.steinb...@gmail.com> wrote:
> I get around this by rendering both items separately and then combining
> the two images in photoshop.
>
> Is there a way to do what Nasir is asking directly in PyMOL?
>
>
>
> > On Feb 16, 2016, at 8:15 AM, Nasir Bashiruddin <nasir...@gmail.com>
> wrote:
> >
> > Hello!
> >
> > So, I've had this problem for a while now.
> >
> > I have a ligand that goes deep into a protein.
> >
> > I have the ligand with stick representation.
> >
> > I have the protein in cartoon representation.
> >
> > I have both ligand and protein surfaced with 0.5 transparencies.
> >
> > The ligand surface is yellow and the protein surface is gray80.
> >
> > The protein cartoon is set to transparency, 0.5 as well.
> >
> > I want to show how the ligand goes deep into the binding site of the
> protein.
> >
> > I can see the ligand surface going into the protein surface but when I
> Ray, the yellow ligand surfaces that go into the protein disappear.
> >
> > How do I get the Ray quality and keep the ligand surface that is within
> the protein from disappearing?
> >
> > Hope I explained this well.
> > BTW, surface mode is set to 1 to include all atoms
> >
> > Nasir
> >
> ------------------------------------------------------------------------------
> > Site24x7 APM Insight: Get Deep Visibility into Application Performance
> > APM + Mobile APM + RUM: Monitor 3 App instances at just $35/Month
> > Monitor end-to-end web transactions and take corrective actions now
> > Troubleshoot faster and improve end-user experience. Signup Now!
> >
> http://pubads.g.doubleclick.net/gampad/clk?id=272487151&iu=/4140_______________________________________________
> > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
> > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
> > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
>
>
------------------------------------------------------------------------------
Site24x7 APM Insight: Get Deep Visibility into Application Performance
APM + Mobile APM + RUM: Monitor 3 App instances at just $35/Month
Monitor end-to-end web transactions and take corrective actions now
Troubleshoot faster and improve end-user experience. Signup Now!
http://pubads.g.doubleclick.net/gampad/clk?id=272487151&iu=/4140
_______________________________________________
PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
