Hello!
So, I've had this problem for a while now.
I have a ligand that goes deep into a protein.
I have the ligand with stick representation.
I have the protein in cartoon representation.
I have both ligand and protein surfaced with 0.5 transparencies.
The ligand surface is yellow and the protein surface is gray80.
The protein cartoon is set to transparency, 0.5 as well.
I want to show how the ligand goes deep into the binding site of the
protein.
I can see the ligand surface going into the protein surface but when I Ray,
the yellow ligand surfaces that go into the protein disappear.
How do I get the Ray quality and keep the ligand surface that is within the
protein from disappearing?
Hope I explained this well.
BTW, surface mode is set to 1 to include all atoms
Nasir
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