Do you have the python code from freemol.org ? -David
> On Jul 8, 2016, at 7:02 AM, Ioannis Michalopoulos <imicha...@bioacademy.gr> > wrote: > >> On Friday 08 of July 2016 11:10:08 Folmer Fredslund wrote: >> Dear Ioannis, >> >>> On 2016-07-08 09:04, Ioannis Michalopoulos wrote: >>> Dear PyMOL users, >>> >>> I use Kubuntu 14.04. I compiled PyMOL, following some instructions on the >>> web. This produced the directory: >>> >>> /opt/pymol-svn/ >>> >>> and a symbolic link to pymol executable: >>> >>> /usr/bin/pymol -> /opt/pymol-svn/pymol* >>> >>> PyMOL works fine. Nevertheless, when I try: >>> >>> File > Save Movie As > MPEG... >>> >>> I get the following error message: >>> >>> MPEG encoder missing. >>> The FreeMOL add-ons may not be installed >>> >>> I downloaded the source code for mpeg_encode (freemol-mpeg_encode.tar.gz) >>> from: >>> >>> http://www.bioinformatics.org/cgi-bin/viewvc.cgi/freemol/trunk/src/mpeg_en >>> code/?view=tar >>> >>> and I did the following: >>> >>> tar zxvf freemol-mpeg_encode.tar.gz >>> cd mpeg_encode >>> ./configure >>> make >>> sudo make install >>> >>> This created the following file: >>> >>> /bin/mpeg_encode.exe >>> >>> That means that mpeg_encode.exe is in the PATH (it runs from any >>> directory). mpeg_encode.exe seems to work. Unfortunately, when I try to >>> produce a movie in pymol, I get the same error message. What have I done >>> wrong? >> >> I hope it is very simple. >> You need to include an environment variable $FREEEMOL pointing at the >> directory where >> freemol is installed >> >> If you are using bash that would be >> export FREEMOL=/your/bath/to/freemol/ >> where the mpeg_encode.exe file is in >> /your/bath/to/freemol/bin/mpeg_encode.exe >> >> Hope this helps! > > I created a directory: > > /opt/freemol > > with two subdirectories: > > /opt/freemol/bin > /opt/freemol/licenses > > which contain the files: > > /opt/freemol/bin/mpeg_encode.exe > /opt/freemol/licenses/mpeg_encode.txt > > I created the file: > > pymol.sh > > with this content: > > #!/bin/bash > FREEMOL=/opt/freemol > export FREEMOL > pymol > > I ran pymol.sh, but the problem remained the same. Any idea? > > Ioannis > >> Folmer >> >>> Thank you in advance. >>> >>> Best Regards, >>> >>> Ioannis > > -- > Dr Ioannis Michalopoulos > Staff Research Scientist - Associate Professor Level > Centre of Systems Biology > > Tel: +30 210 6597 127 > Fax: +30 210 6597 545 > Email: imicha...@bioacademy.gr > _________________________________________________ > Biomedical Research Foundation, Academy of Athens > Soranou tou Efessiou 4, 115 27 Athens, Greece > > ------------------------------------------------------------------------------ > Attend Shape: An AT&T Tech Expo July 15-16. Meet us at AT&T Park in San > Francisco, CA to explore cutting-edge tech and listen to tech luminaries > present their vision of the future. This family event has something for > everyone, including kids. Get more information and register today. > http://sdm.link/attshape > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net ------------------------------------------------------------------------------ Attend Shape: An AT&T Tech Expo July 15-16. Meet us at AT&T Park in San Francisco, CA to explore cutting-edge tech and listen to tech luminaries present their vision of the future. This family event has something for everyone, including kids. Get more information and register today. http://sdm.link/attshape _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
