Hi,
For your 2nd question:
You can make pseudoatom at Center of mass or center of geometry (for an
object or probably selection too) using the following script:
https://pymolwiki.org/index.php/Center_of_mass
In your case you mat try:
import center_of_mass
com SelectionObjectName, state=1#Create a pseudoatom representing the
Object COG and store it as "SelectionObjectName_COM"
On Thu, Jan 26, 2017 at 4:52 AM kanika sharma <ksharma...@gmail.com> wrote:
> Dear PyMol Users,
>
> I am struggling here two things.
> 1). I want to place a pseudoatom in the charge centre of a non aromatic
> residue, like arginine.
> 2). Is it possible to place another pseudoatom in the centre of a cavity
> in the protein? I am thinking how can I define the co ordinates of the
> position where I wan t to place the pseudoatom?
>
> Thanks
>
> --
> *Best,*
>
> *Kanika*
>
>
>
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Dr. Hitesh Patel
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