Hi,
I use a python script to copy an object, rotate it, alter its chain ID and then
merge it with the original object.
Here is the relevant part of my script:
angle = 360.0/monomers
chains = ["A", "B", "C", "D", "E", "F", "G", "H", "I",
"J", "K", "L", "M", "N", "O", "P", "Q", "R", "S", "T", "U", "V", "W", "X", "Y",
"Z"]
for i in range(1, monomers):
currentChain = chains[i]
cmd.create("%s_%s" %(solutionPymolString,
currentChain), solutionPymolString, 1, 1)
cmd.rotate([1, 0, 0], i * angle, "%s_%s"
%(solutionPymolString, currentChain), 1, 0, None, [0, 0, 0])
cmd.alter("%s_%s" %(solutionPymolString,
currentChain), "chain='%s'" %currentChain)
cmd.create("%s" %(solutionPymolString), "%s or
%s_%s" %(solutionPymolString, solutionPymolString, currentChain), 1, 1)
cmd.delete("%s_%s" %(solutionPymolString,
currentChain))
This works fine with PyMOL 1.8.3 and 1.8.5 on my computer (macOS Sierra).
I have given the script to another person and for her it produces a very
strange result.
The resulting structure is only visible in lines or sticks mode. And it looks
like this in the sequence viewer:
She used the same input structure as I did but she has PyMOL 1.8.4 and uses
Windows. Could this be a PyMOL bug?
Cheers,
Gregor
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