Hi Gregor, Looks like retain_order is on for her. This should fix it:
PyMOL> set retain_order, off https://pymolwiki.org/index.php/Retain_order Cheers, Thomas On 01 Mar 2017, at 10:28, Gregor Hagelüken <hagelue...@pc.uni-bonn.de> wrote: > Hi, > > I use a python script to copy an object, rotate it, alter its chain ID and > then merge it with the original object. > Here is the relevant part of my script: > > angle = 360.0/monomers > chains = ["A", "B", "C", "D", "E", "F", "G", "H", "I", > "J", "K", "L", "M", "N", "O", "P", "Q", "R", "S", "T", "U", "V", "W", "X", > "Y", "Z"] > for i in range(1, monomers): > currentChain = chains[i] > cmd.create("%s_%s" %(solutionPymolString, > currentChain), solutionPymolString, 1, 1) > cmd.rotate([1, 0, 0], i * angle, "%s_%s" > %(solutionPymolString, currentChain), 1, 0, None, [0, 0, 0]) > cmd.alter("%s_%s" %(solutionPymolString, > currentChain), "chain='%s'" %currentChain) > cmd.create("%s" %(solutionPymolString), "%s or > %s_%s" %(solutionPymolString, solutionPymolString, currentChain), 1, 1) > cmd.delete("%s_%s" %(solutionPymolString, > currentChain)) > > This works fine with PyMOL 1.8.3 and 1.8.5 on my computer (macOS Sierra). > > I have given the script to another person and for her it produces a very > strange result. > The resulting structure is only visible in lines or sticks mode. And it looks > like this in the sequence viewer: > <PastedGraphic-2.tiff> > > She used the same input structure as I did but she has PyMOL 1.8.4 and uses > Windows. Could this be a PyMOL bug? > > Cheers, > Gregor -- Thomas Holder PyMOL Principal Developer Schrödinger, Inc. ------------------------------------------------------------------------------ Check out the vibrant tech community on one of the world's most engaging tech sites, SlashDot.org! http://sdm.link/slashdot _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
