Hi Ahmad,
Because the chain contains prolines. These typically cause kinks in a chain.
Cheers,
Tsjerk
On Fri, Apr 7, 2017 at 2:26 PM, Ahmad Abdelzaher <underoath...@gmail.com>
wrote:
> Hello,
>
> I used cmd.fab('sequence', ss=4) to create 1baz_linear_protein.pdb,
> where sequence is the sequence extracted from 1baz.pdb.
>
> My question is, why does Pymol introduce the bends that you can see in
> 1baz_linear_protein.pdb attached below?
>
> Regards.
>
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--
Tsjerk A. Wassenaar, Ph.D.
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