You get kinks wherever there is a proline in the sequence, because the ring of
the PRO residues restrict the phi angle
Annemarie
>
> ------------------------------
>
> Message: 4
> Date: Fri, 7 Apr 2017 14:26:34 +0200
> From: Ahmad Abdelzaher <underoath...@gmail.com>
> Subject: [PyMOL] Pymol fab ss = 4 introduces bends in the structure
> To: pymol-users <pymol-users@lists.sourceforge.net>
> Message-ID:
> <cal1o8vowymanrpmo0qdtrprps1r_pen3zvmymkwp-h7tzy9...@mail.gmail.com>
> Content-Type: text/plain; charset="utf-8"
>
> Hello,
>
> I used cmd.fab('sequence', ss=4) to create 1baz_linear_protein.pdb,
> where sequence is the sequence extracted from 1baz.pdb.
>
> My question is, why does Pymol introduce the bends that you can see in
> 1baz_linear_protein.pdb attached below?
>
> Regards.
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