Hi,

Select the one you want e.g. right click, chain select. Under the selection, 
Action > modify > invert > within object..

Or you can select using the sequence viewer

Hope this helps

Joel

From: Mohammad Goodarzi [mailto:[email protected]]
Sent: Friday, 23 June 2017 8:20 AM
To: [email protected]
Subject: [PyMOL] Removing unwanted molecules

Hello,
    I want to know how to delete chain B and all ligands except the one that I
    want ?
    Is there any way to know all molecules which comes with a PDB and then
    remove those that you dont want?
    Thanks
    Mohammad
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