I've upgraded some of the users to version 1.9.0.0 due to moving to windows 10.
It's the build from Christoph Gohlke.
We use it mainly for one purpose and to make it easier I created a short pml
script to load the data and apply settings. However pymol doesn't behave the
same anymore.
The script:
reference.sdf
targets.sdf
preset.pretty(selection='all')
set valence, 1
set stick_radius, 0.2
In version 1.7.2.1 this would load the 2 files and all mols in file 2 had a
different coloring than in file 1. Also hydrogen hat the same stick size as the
other bonds. I could go to hide/show to remove/add the hydrogens.
In Version 1.9.0.0 this is different:
1. all molecules have the same color. Changing color isn't applied
automatically anymore
2. The hydrogen sticks are tiny. how do I make them the same size again?
(least important issue)
3. If I hide all the hydrogens I can't make them appear again.
For 3: there is no options unde rshow menu to show the hydrogens again. If I go
to Action menu and add hyrodgens I get an error:
AddHydrogens-Error: can't modify a discrete object.
So how can i show hide hydrogens?
Thanks for the help.
Thomas
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