This is my first e-mail to this list. Sorry in advance for my bad english.

I've been using APBS for the past month in order to build protein binding
sites representations for a artificial neural network I've been working on.
At first I used the OpenDX output file from APBS stand-alone but I wanted
to generate Isomesh files aswell, in order to store the files conveniently
for future analysis or even to use as data input at some order work.

1- When APBS finished calculation, it creates a map object. But how does
PyMol translate the .dx map into that beautiful Isomesh? (achievable using
the Isomesh command aswell)

2- How to save that isomesh in a way I could open it again with Pymol or
another Visualization tool? (I already tried saving as .wrl. but I cannot
open it on Pymol and the file syntax is confusing)

3- Are there any other softwares or libraries to do such things? (output
isomesh at one specific level (5), store it in a convenient way, etc)

Thanks for the attention.

Fernando Limoeiro Lara de Oliveira, Graduando, Biofísica - UFRJ - Xerém
Aluno de Iniciação Científica
Laboratório de Biologia Computacional - LaBiC
Diretório de Metrologia Aplicada às Ciências da Vida - DIMAV
Instituto Nacional de Metrologia, Qualidade e Tecnologia - INMETRO
Av. Nossa Senhora das Graças, 50 - Xerém, Duque de Caxias, RJ - CEP:
Tel.: +55 21 2145-3070
Lattes *curriculum*: http://lattes.cnpq.br/5677811257298963
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