Hi Maria, If the load command fails, then you don't have the correct "working directory". You can query PyMOL's working directory with the "pwd" command and change it with "cd". See:
https://pymolwiki.org/index.php/Pwd https://pymolwiki.org/index.php/Cd Or more easily from the PyMOL 2.0 menu: "File > Working Directory > Change..." Loading session files "partially" has also become even easier in PyMOL 2.0. Just use "File > Open...", after browsing for your .pse file PyMOL will show a dialog where you can choose to load partial or not. Cheers, Thomas > On Feb 6, 2018, at 12:46 PM, COSTA Maria <maria.co...@i2bc.paris-saclay.fr> > wrote: > > Dear PyMOL users, > > I would like to combine two pymol sessions together to compare to different > conformations of a molecule that I have in two different pse files. > > One of you suggested me the following (and this works with others) > > load session1.pse > load session2.pse, partial=1 > > but in my case, when I open a new pymol session and type : load > nameofmysession.pse I get an error saying ‘can’t open nameofmysession.pse’ ? > Is this because pymol doesn’t find my pse file in my computer ? If yes, > where should I store my pse session files ? > > Also, regarding how to proceed: Should I open a new pymol session and type > the two command lines above successively ? For example, should I type “load > session1.pse” first, hit enter and then type ‘load session2.pse, partial=1’ ?? > > Many thanks for your help, > > Maria -- Thomas Holder PyMOL Principal Developer Schrödinger, Inc. ------------------------------------------------------------------------------ Check out the vibrant tech community on one of the world's most engaging tech sites, Slashdot.org! http://sdm.link/slashdot _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
