Hi Thomas,
Fantastic! I can confirm that this works on my end. Thanks everyone.
Cody
On 4/25/18, 5:07 PM, "Thomas Holder" <thomas.hol...@schrodinger.com> wrote:
Hi Cody,
I found a simple workaround to get stereo working in batch mode. Just set
the "stereo" setting to 1 after switching to anaglyph, like this:
stereo anaglyph
set stereo
Cheers,
Thomas
> On Apr 24, 2018, at 8:29 AM, Thomas Holder
<thomas.hol...@schrodinger.com> wrote:
>
> Thanks Jared and Cody! There is not much I can add, yes this looks like a
bug and we should fix it.
>
> Cheers,
> Thomas
>
>> On Apr 23, 2018, at 11:51 PM, Jared Sampson <jared.samp...@columbia.edu>
wrote:
>>
>> Hi Cody -
>>
>> I can confirm that I see similar behavior on 2.1.0 (stereo rendered
properly from the GUI but not in batch mode) but the issue is not limited to
just anaglyph stereo. Rather, (admittedly not having tested all stereo_mode
options) it seems stereo in general doesn't get rendered as expected in batch
mode. I imagine Thomas will chime in as well, but I would file a bug report
with pymol-dev-gr...@schrodinger.com and/or via
https://sourceforge.net/p/pymol/bugs/.
>>
>> Cheers,
>> Jared
>>
>> On April 23, 2018 at 6:59:03 PM, Cody Jackson (cjack...@scripps.edu)
wrote:
>>
>>> Hi Everyone,
>>>
>>> I'm trying to make anaglyph 3D figures and movies in command line mode
and I'm having some trouble - using incentive version 2.1.1 right now.
>>>
>>> It seems like anaglyph stereo is only ray traced when the GUI is open.
Here's a quick example adapted from the wiki, it saves the desired red-cyan png
when I run it with @script.pml in the GUI, but I only get the 2D output when I
run pymol -c script.pml. Is there a trick to getting stereo images in the
command line/batch mode? Is it not possible?
>>>
>>> --
>>> fetch 1ESR, async=0
>>> as cartoon
>>> set cartoon_smooth_loops
>>> spectrum
>>> bg white
>>> stereo anaglyph
>>> ray 640,480
>>> png demo.png
>>> --
>>>
>>> Thank you for any input.
>>>
>>> Best,
>>> Cody Jackson
--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.
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