Wow. I like it. Thanks. I got 8 structures with their respective maps. So in order to view them all at once, interactively, I think I only need to merge my code with yours and ...add a ramp for every map? I am gonna try that now. Here's my code (pml attached)
If you want to have my maps and pdbs please tell me. 2018-06-15 13:22 GMT-05:00 Thomas Holder <thomas.hol...@schrodinger.com>: > Hi Murpholino, > > How about an interactive version instead of a fix-speed movie? The > attached script maps the F1 key to advance to the next residue, and F2 to > go back. It also colors atoms by density fit (red if they don't fit into > the 1.2 sigma shell). It will only show sticks for the current residue, to > make it more visible. > > Cheers, > Thomas > > > > > > > On Jun 15, 2018, at 4:36 PM, Murpholino Peligro <murpholi...@gmail.com> > wrote: > > > > Dear PyMOL users...... > > I found this bb_inspector at https://pymolwiki.org/index. > php/MovieSchool_4 > > It kinda does what I want, so I tweak it little bit ... (*.pml attached) > > If you run the script and play the movie you'll see that sometimes the > sidechain is a little bit obscured by some density/atoms in the front. How > do I make them more visible? > > > > Lots of thanks > > > > > > > > > > > > 2018-06-15 8:31 GMT-05:00 Murpholino Peligro <murpholi...@gmail.com>: > > Dear PyMOL users... > > > > Is there a way to orient every sidechain and take a picture to produce a > movie? > > > > Idea: By aligning the pdbs and maps and having them in the grid mode, > with this movie I could f take a quick look at how well my electron density > fits to all my models... > > > > Thanks > > > > <sc_inspector.pml>------------------------------------------ > ------------------------------------ > > -- > Thomas Holder > PyMOL Principal Developer > Schrödinger, Inc. > > >
sidebysidecomparison.pml
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