Thanks.
It works perfect this time.
2018-06-20 15:00 GMT-05:00 Thomas Holder <thomas.hol...@schrodinger.com>:
> Hi Murpholino,
>
> This should be the correct selection expression:
>
> sele = '(sc. or name CA) and i. {}'.format(stored.x)
>
> Cheers,
> Thomas
>
> > On Jun 20, 2018, at 3:11 PM, Murpholino Peligro <murpholi...@gmail.com>
> wrote:
> >
> > I have waters and ions in my structures.
> >
> > If I add the "sc." it works for non-glycine residues. (The error is
> "ExecutiveWindowZoom-Warning: selection doesn't specify any coordinates.")
> > How to tweak it so that F1 works for all my residues?
> >
> > Ps I was thinking to include the alpha carbon in the selection so the
> sidechain does not look truncated
> > sele = 'sc. and i. or name ca and i. {}'.format(stored.x)
> > This works but it centers on the ca and not the sc. Plus... sticks are
> not drawn.
> > Ps. Sorry for the delay. I was very sick.
> >
> >
> >
> > 2018-06-18 5:12 GMT-05:00 Thomas Holder <thomas.hol...@schrodinger.com>:
> >
> > > It works ...but the F1 key now zooms farther away from the
> residues..... :P
> >
> > Are there other atoms with residue number 1? Ligands? Solvent? I had
> removed the "sc." selector, so that it works on Glycine as well. You can
> add it back to the sele string in the zoomnext function.
> >
> > sele = 'sc. and i. {}'.format(stored.x)
> >
> > Cheers,
> > Thomas
>
> --
> Thomas Holder
> PyMOL Principal Developer
> Schrödinger, Inc.
>
>
------------------------------------------------------------------------------
Check out the vibrant tech community on one of the world's most
engaging tech sites, Slashdot.org! http://sdm.link/slashdot
_______________________________________________
PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
