Hi Jarrett
Thanks for this, however, the trajectories of the cartoon change when only part
of it is shown so that the transparent and non-transparent segments to not
connect seamlessly.
Cheers, Paul
Paul Steven Miller (PhD)
Postdoctoral Researcher
University of Oxford
Wellcome Trust Centre for Human Genetics
Division of Structural Biology
Roosevelt Drive
Oxford
OX3 7BN
-----Original Message-----
From: "Jarrett Johnson" <jarrett.john...@schrodinger.com>
To: "Paul Miller" <p...@strubi.ox.ac.uk>
Cc: "Pymol User list" <pymol-users@lists.sourceforge.net>
Date: 07/23/18 15:47
Subject: Re: [PyMOL] cartoon range transparency help
Hello,
That seems to be the case for that command. One workaround for this is to use
the 'create' command to create a new object identical to your source object and
make that one transparent. I've attached a quick example.
Jarrett J.
On Mon, Jul 23, 2018 at 9:36 AM, Paul Miller <p...@strubi.ox.ac.uk> wrote:
Hi
I have Pymol version 2
When I try to make a range of a cartoon transparent
e.g. I type: set cartoon_transparency, 0.5, /4COF//A/1:20
it comes up with following error:
Setting-Warning: 'cartoon_transparency' is a object-state-level setting
Does this mean one cannot make part of a cartoon transparent?
Cheers, Paul
Paul Steven Miller (PhD)
Postdoctoral Researcher
University of Oxford
Wellcome Trust Centre for Human Genetics
Division of Structural Biology
Roosevelt Drive
Oxford
OX3 7BN
------------------------------------------------------------------------------
Check out the vibrant tech community on one of the world's most
engaging tech sites, Slashdot.org! http://sdm.link/slashdot
_______________________________________________
PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
--
Jarrett Johnson,
Schrödinger
------------------------------------------------------------------------------
Check out the vibrant tech community on one of the world's most
engaging tech sites, Slashdot.org! http://sdm.link/slashdot
_______________________________________________
PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
