Hi again Jarrett,
I have built the latest version from git (PyMOL 2.3.0a0 Open-Source) on my system. The behaviour is still there, but I realise that this it is now only when the selection is a ligand. For instance trying to find polar contacts between a ligand and sourrounding side chains. If I make a selection involving both the ligand and side chains of interest first however, it works fine. It is an easy workaround, but i would be curious to know if you can replicate it on your system. For instance if you fetch pdb id: 1EEM and make a selection from resname GSH, then try to find polar contacts involving side chains from the action menu, you should see what I mean. Cheers, Joseph. Joseph S. Brock | PhD Researcher Drew Lab Department of Biochemistry and Biophysics Stockholm University ________________________________ From: Joseph Brock <joseph.br...@dbb.su.se> Sent: Friday, 26 October 2018 8:57:44 AM To: Jarrett Johnson Cc: Pymol User list Subject: Re: [PyMOL] distance Thanks Jarrett! I will try that! Cheers, Joseph. Joseph S. Brock | PhD Researcher Drew Lab Department of Biochemistry and Biophysics Stockholm University ________________________________ From: Jarrett Johnson <jarrett.john...@schrodinger.com> Sent: Friday, 26 October 2018 12:23:46 AM To: Joseph Brock Cc: Pymol User list Subject: Re: [PyMOL] distance Built from source (github repo). On Thu, Oct 25, 2018 at 5:56 PM Joseph Brock <joseph.br...@dbb.su.se<mailto:joseph.br...@dbb.su.se>> wrote: Hi Jarret, Thanks for the reply! Unfortunately so ;( Did you build from source or install via apt-get? https://pymolwiki.org/index.php/Linux_Install Cheers, Joseph. Joseph S. Brock | PhD Researcher Drew Lab Department of Biochemistry and Biophysics Stockholm University ________________________________ From: Jarrett Johnson <jarrett.john...@schrodinger.com<mailto:jarrett.john...@schrodinger.com>> Sent: Thursday, 25 October 2018 11:34:28 PM To: Joseph Brock Cc: Pymol User list Subject: Re: [PyMOL] distance Hi Joseph, I'm not able to replicate that on my end using open-source PyMOL 2.2 on Ubuntu 16.04. Does this behavior also occur for molecules fetched straight from the PDB? Jarrett J. On Thu, Oct 25, 2018 at 4:44 PM Joseph Brock <joseph.br...@dbb.su.se<mailto:joseph.br...@dbb.su.se>> wrote: Hi pymol users, I've observed a weird behaviour with the open source pymol (v 1.7.2.1-2.2 running on ubuntu 16.04). When I try to create some distance objects either via the command line of the actions menu, an object is created but no dashed lines appear. When I "zoom" this object it is very far in space from the atoms I selected to make the distances between, and there is still nothing I can do to make the dashed lines appear. If anyone can let me know what I'm doing wrong I would appreciate it! Cheers, Joseph. Joseph S. Brock | PhD Researcher Drew Lab Department of Biochemistry and Biophysics Stockholm University _______________________________________________ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe -- Jarrett Johnson PyMOL Developer Schrödinger, Inc. -- Jarrett Johnson PyMOL Developer Schrödinger, Inc.
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