Hi Yufeng,

This is a problem with a recent graphics driver update from Intel on
Windows 10. So far it appears that the build series "4.5.0 - Build
24.20.100.xxxx" is affected. Can you please tell us what PyMOL reports
as "OpenGL graphics engine" (3 lines printed in log window on
startup)?

Luckily, there is a simple workaround, PyMOL has two different
implementations of the lighting model and only one is affected. Type
this into the PyMOL command line or put it in your pymolrc file:

    set precomputed_lighting

Cheers,
  Thomas
On Tue, Oct 30, 2018 at 11:48 PM Yufeng Tong <yufeng.t...@gmail.com> wrote:
>
> Hi there,
>
> I installed PyMol on a new laptop (Windows 10, within Anaconda3) and
> run into a display problem, which does not exist on a Windows 7
> laptop.
>
> Basically, the displayed molecules does not have the 3D visual effect
> and the colors are very dark. Only after I apply "ray", it shows
> normal color but then of course I cannot rotate the molecules without
> loosing the normal view. The same problem occurs to PyMol version 2.3
> or 2.2 from the Schrödinger channel or the Gohlke's unofficial
> packages. Tried to change color space, light position, and all options
> under Display menu and none seems to change the results. Installed
> PyQt and the problem persists.
>
> I tried the same installation process on an older Windows 7 laptop and
> all looks normal. Attached are two screen copy of the display before
> and after applying "ray", they can also be viewed from
> https://1drv.ms/f/s!Ao4PGr4qLLsZjQiafUTIaUFTyxNn
>
> I guess it is a problem of the GUI. Any hints are greatly appreciated.
>
> Yufeng
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