Hi, What is the best way to align the snapshots of a trajectory when viewing in pymol? Is it possible to align using a selection, say on a few selected residues?
Nese ________________________________ From: Istvan Kolossvary [ikolos...@gmail.com] Sent: Tuesday, November 20, 2018 11:43 PM To: pymol-users@lists.sourceforge.net Subject: Re: [PyMOL] Viewing trajectories in pymol You can add a slider to the movie panel. # Set a movie slider set movie_panel=1 #movie.add_state_sweep(1,0,start=1) movie.add_state_loop(1,0,start=1) Best, Istvan On Tue, Nov 20, 2018 at 5:02 AM Floris van Eerden <florisvaneer...@biken.osaka-u.ac.jp<mailto:florisvaneer...@biken.osaka-u.ac.jp>> wrote: Dear Pymol community, Is there a way to easily view trajectories with pymol? In VMD there is some kind of scrollbar, with which it is really easy to scroll through a simulation. Is some similar functionality available somehow in pymol. The only similar thing is the movie_panel in conjunction with the mset command. However this does not provide as a smooth experience. Best wishes, Floris van Eerden _______________________________________________ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net<https://urldefense.proofpoint.com/v2/url?u=http-3A__www.mail-2Darchive.com_pymol-2Dusers-40lists.sourceforge.net&d=DwMFaQ&c=WJBj9sUF1mbpVIAf3biu3CPHX4MeRjY_w4DerPlOmhQ&r=eSbvS1GcfWuUjgAauHz0g1f0A5qNz0rc2THr_TQr2tE&m=LnAnOCDh--BadJSQ541BIMtEwWIoRVYaYk7uOciE6pY&s=pS7H7gNmctghTtZt5IH7nLM7QIwzgVWu7HCJYcvo4tU&e=> Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe<https://urldefense.proofpoint.com/v2/url?u=https-3A__sourceforge.net_projects_pymol_lists_pymol-2Dusers_unsubscribe&d=DwMFaQ&c=WJBj9sUF1mbpVIAf3biu3CPHX4MeRjY_w4DerPlOmhQ&r=eSbvS1GcfWuUjgAauHz0g1f0A5qNz0rc2THr_TQr2tE&m=LnAnOCDh--BadJSQ541BIMtEwWIoRVYaYk7uOciE6pY&s=vRNaSYdcXcUbLgLChWpKz-URDV2Fi3TVRpMraAhUw_Y&e=>
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