Dear Ivan, Thanks for the suggestion. However it has the same result as what I tried before. The slider does the job, but is not responsive enough for intense scrolling through trajectories (not sure if it is because the rendering take to much CPU or because the slider is just not designed for that purpose). Anyway thanks for the suggestion.
@Nese, there is the intra_fit command, you could try to use it on a selection only. On 22 Nov 2018, at 0:37, KurtYilmaz, Nese wrote: Hi, What is the best way to align the snapshots of a trajectory when viewing in pymol? Is it possible to align using a selection, say on a few selected residues? Nese ________________________________ From: Istvan Kolossvary [ikolos...@gmail.com] Sent: Tuesday, November 20, 2018 11:43 PM To: pymol-users@lists.sourceforge.net Subject: Re: [PyMOL] Viewing trajectories in pymol You can add a slider to the movie panel. # Set a movie slider set movie_panel=1 #movie.add_state_sweep(1,0,start=1) movie.add_state_loop(1,0,start=1) Best, Istvan On Tue, Nov 20, 2018 at 5:02 AM Floris van Eerden <florisvaneer...@biken.osaka-u.ac.jp<mailto:florisvaneer...@biken.osaka-u.ac.jp>> wrote: Dear Pymol community, Is there a way to easily view trajectories with pymol? In VMD there is some kind of scrollbar, with which it is really easy to scroll through a simulation. Is some similar functionality available somehow in pymol. The only similar thing is the movie_panel in conjunction with the mset command. However this does not provide as a smooth experience. Best wishes, Floris van Eerden _______________________________________________ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net<https://urldefense.proofpoint.com/v2/url?u=http-3A__www.mail-2Darchive.com_pymol-2Dusers-40lists.sourceforge.net&d=DwMFaQ&c=WJBj9sUF1mbpVIAf3biu3CPHX4MeRjY_w4DerPlOmhQ&r=eSbvS1GcfWuUjgAauHz0g1f0A5qNz0rc2THr_TQr2tE&m=LnAnOCDh--BadJSQ541BIMtEwWIoRVYaYk7uOciE6pY&s=pS7H7gNmctghTtZt5IH7nLM7QIwzgVWu7HCJYcvo4tU&e=> Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe<https://urldefense.proofpoint.com/v2/url?u=https-3A__sourceforge.net_projects_pymol_lists_pymol-2Dusers_unsubscribe&d=DwMFaQ&c=WJBj9sUF1mbpVIAf3biu3CPHX4MeRjY_w4DerPlOmhQ&r=eSbvS1GcfWuUjgAauHz0g1f0A5qNz0rc2THr_TQr2tE&m=LnAnOCDh--BadJSQ541BIMtEwWIoRVYaYk7uOciE6pY&s=vRNaSYdcXcUbLgLChWpKz-URDV2Fi3TVRpMraAhUw_Y&e=> _______________________________________________ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
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