OK, with latest pymol this works fine set cartoon_transparency, 0.5, object
this does not work set cartoon_transparency, 0.5, ss H+S how I can select for example all of the objects in the current session + ss H+S ? ср, 26 июн. 2019 г. в 11:13, Thomas Holder <thomas.hol...@schrodinger.com>: > > Hi James and Ali, > > Are you using PyMOL 2.3 yet? > > "As of PyMOL version 2.3, cartoon transparency is now an atom-level setting." > > https://pymolwiki.org/index.php/Cartoon_transparency > > Cheers, > Thomas > > > On Jun 26, 2019, at 10:26 AM, Ali Kusay <akus8...@uni.sydney.edu.au> wrote: > > > > Hi James, > > > > I am not sure what the exact cause of your issue is but I think if you make > > a selection first then apply the transparency to the selection that should > > work, i.e.: > > > > sele ss H+S > > set cartoon_transparency, 0.5, sele > > > > Something to do with selection based transparency settings not enabling > > newer ones to be made > > > > Cheers, > > > > Ali > > > > On 26/6/19, 6:18 pm, "James Starlight" <jmsstarli...@gmail.com> wrote: > > > > Dear pymol users! > > > > I am trying to set transparency based on the secondary structure using > > pymol selection algebra > > > > # set transparency to all helix and sheets but not loops > > set cartoon_transparency, 0.5, ss H+S > > > > which produce the following output > > PyMOL>set cartoon_transparency, 0.5, ss H+S > > Setting: cartoon_transparency set for 144 atoms in object > > "0190_before_minim". > > > > but actually do nothing in terms of visualization. > > > > Could you suggest me how it would be possible to fix it? > > > > Thanks in advance! > > > > > > _______________________________________________ > > PyMOL-users mailing list > > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > > Unsubscribe: > > https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe > > > > > > > > _______________________________________________ > > PyMOL-users mailing list > > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > > Unsubscribe: > > https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe > > -- > Thomas Holder > PyMOL Principal Developer > Schrödinger, Inc. > _______________________________________________ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
