there are two ways to achieve this (might not be correct ways, but it will give you results) 1. Open the molucule and choose show as Surface [image: image.png]
This will show complete molecule as a surface. Remember choosing show as surface after choosing line or cartoon will remove former from viewport. - Now choose parts you want to keep and color them before moving on to next part Next select the same molecule and enable line [image: image.png] remember to not choose line in show as menu but directly from show menu This will keep the old object and add the new line visualization. This way you can show both custom color surface and default color of line/cartoon this way has limitation that you cannot color the second scheme but have to use the default coloring way. 2. Copy the molecule you want to load and create a copy in the folder Load both moleculaes [You won't even need to align them] now You can choose any visualization for both moleculaes as they are separate files. Regards, *Saurabh Gayali* --------------------------------------------------------------------- <https://www.avast.com/en-in/recommend?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail&utm_term=default3&tag=679038cc-2984-4da3-8f35-9d7818611687> I’m protected online with Avast Free Antivirus. Get it here — it’s free forever. <https://www.avast.com/en-in/recommend?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail&utm_term=default3&tag=679038cc-2984-4da3-8f35-9d7818611687> <#DAB4FAD8-2DD7-40BB-A1B8-4E2AA1F9FDF2> On Sat, Jul 6, 2019 at 2:29 PM sunyeping via PyMOL-users < pymol-users@lists.sourceforge.net> wrote: > Dear all, > > I color a protein as blue, display it by surface and cartoon > simultaneously, and set the surface transperant so that the cartoon > representation inside the surface can be seen. I display one residue as > stick. I want to color the stick by element, but keep the surface > representation as blue. However, I don't know how to do this. I can color > the residue (please see the Gln in the yellow circle at > https://drive.google.com/open?id=1bviFQGUKgqLdbE-cUNDtzDZSdabc0N4Z), but > both the stick and the surface representations are colored by element. > Could anyone tell me how to color stick representation of this Gln by > element but keep its surface representation as blue? > > Thank you in advance > Yeping > _______________________________________________ > PyMOL-users mailing list > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > Unsubscribe: > https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
_______________________________________________ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
