Hi, Thank you. I think a third method is to create a new object of the protein and display the stick in this new object, and display surface of the original object, so I can color them separately.
Best regards
------------------------------------------------------------------
From:Saurabh Gayali <saurabh.gay...@gmail.com>
Sent At:2019 Jul. 6 (Sat.) 18:20
To:孙业平 <sunyep...@aliyun.com>
Cc:pymol-users <pymol-users@lists.sourceforge.net>
Subject:Re: [PyMOL] How to color stick and surface representation separately
there are two ways to achieve this (might not be correct ways, but it will give
you results)
1. Open the molucule and choose show as Surface
[image.png]
This will show complete molecule as a surface. Remember choosing show as
surface after choosing line or cartoon will remove former from viewport.
-
Now choose parts you want to keep and color them before moving on to next part
Next select the same molecule and enable line
[image.png]
remember to not choose line in show as menu but directly from show menu
This will keep the old object and add the new line visualization.
This way you can show both custom color surface and default color of
line/cartoon
this way has limitation that you cannot color the second scheme but have to use
the default coloring way.
2. Copy the molecule you want to load and create a copy in the folder
Load both moleculaes [You won't even need to align them]
now You can choose any visualization for both moleculaes as they are separate
files.
Regards,Saurabh Gayali
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On Sat, Jul 6, 2019 at 2:29 PM sunyeping via PyMOL-users
<pymol-users@lists.sourceforge.net> wrote:
Dear all,
I color a protein as blue, display it by surface and cartoon simultaneously,
and set the surface transperant so that the cartoon representation inside the
surface can be seen. I display one residue as stick. I want to color the stick
by element, but keep the surface representation as blue. However, I don't know
how to do this. I can color the residue (please see the Gln in the yellow
circle at https://drive.google.com/open?id=1bviFQGUKgqLdbE-cUNDtzDZSdabc0N4Z),
but both the stick and the surface representations are colored by element.
Could anyone tell me how to color stick representation of this Gln by element
but keep its surface representation as blue?
Thank you in advance
Yeping_______________________________________________
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